• Test Code:
  • Department:
    Molecular Genetics
  • Test Synonyms:
    ACTBACTG1AHI1ARFGEF2ARL13BARXASPMATRATRXC5ORF42CASKCC2D2ACDK5RAP2CDKL5CDONCENPJCEP152CEP290CEP41COL4A1CUL4BDCXDHCR7DISP1DLL1EMX2EOMESEXOSC3 EZH2FGF8FKRPFKTNFLNAFOXG1FOXH1GAS1GLI2GLI3GPR56HESX1IER3IP1KIAA1279KIF7L1CAMLAMC3LARGEMCPH1MECP2MED12MKS1MRPS16MYCNNFIX NIPBLNODALNPHP1NSD1OFD1OPHN1OTX2PAFAH1B1PCNTPHF6PIK3CAPOMGNT1POMT1POMT2PQBP1PTCH1PTENRAB18RAB3GAP1RAB3GAP2RARS2RBBP8RELNRPGRIP1LSHHSIX3SLC25A19SLC9A6 SOX2SRPX2STILTCF4TCTN1TCTN2TGIF1TMEM138TMEM216TMEM237TMEM67TSEN2TSEN34TSEN54TTC21BTUBA1ATUBA8TUBB2BTUBB3UBE3AUPF3BVLDLRVRK1WDR62ZEB2ZIC2
  • CPT Code(s):
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Background:

Disorders causing brain malformations are phenotypically heterogeneous; mutations in certain genes have been associated inherited conditions causing brain developmental issues. These conditions could present with dysmorphologic features including holoprosencephaly, microcephaly and macrocephaly. Other clinical phenotypes include dysmorphologies observed in MRIs, seizures, developmental delays and intellectual disability. These conditions could include lissencephalies, cerebellar hypoplasia, Joubert syndrome and Joubert-like disorders. Conditions causing brain malformations can be inherited in an autosomal dominant, recessive and X-linked pattern.

Reasons for Referral:

  • Suspected genetic etiology of a brain malformation
  • Carrier testing
  • Positive family history

For detailed information and ordering instructions, please refer to Full Gene Analysis (1240). Genes may be added or removed from the list below if clinically indicated.

Coding region coverage for the Comprehensive Brain Malformations panel genes:
ACTB, ACTG1, AHI1, ARFGEF2, ARL13B, ARX, ASPM, ATR, ATRX, C5ORF42, CASK, CC2D2A, CDK5RAP2, CDKL5, CDON, CENPJ, CEP152, CEP290, CEP41, COL4A1, CUL4B, DCX, DHCR7, DISP1, DLL1, EMX2, EOMES, EXOSC3, EZH2, FGF8, FKRP,FKTN, FLNA, FOXG1, FOXH1, GAS1, GLI2, GLI3, GPR56, HESX1, IER3IP1, KIAA1279, KIF7, L1CAM, LAMC3, LARGE, MCPH1, MECP2, MED12, MKS1, MRPS16, MYCN, NFIX, NIPBL, NODAL, NPHP1, NSD1, OFD1, OPHN1, OTX2, PAFAH1B1, PCNT, PHF6, PIK3CA, POMGNT1, POMT1, POMT2, PQBP1, PTCH1, PTEN, RAB18, RAB3GAP1, RAB3GAP2, RARS2, RBBP8, RELN, RPGRIP1L, SHH, SIX3, SLC25A19, SLC9A6, SOX2, SRPX2, STIL, TCF4, TCTN1, TCTN2, TGIF1, TMEM138, TMEM216, TMEM237, TMEM67, TSEN2, TSEN34, TSEN54, TTC21B, TUBA1A, TUBA8, TUBB2B, TUBB3, UBE3A, UPF3B, VLDLR, VRK1, WDR62, ZEB2, ZIC2

Methodology:

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